HL7 Europe Common Cancer Model
1.0.0-ballot - ballot 150

This page is part of the HL7 Europe Common Cancer Model (v1.0.0-ballot: STU 1 Ballot 1) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions

CancerPatient Mapping - OMOP

CancerPatient -> PERSON / OBSERVATION / CONDITION_OCCURRENCE
Future implementation content This page is provided to show the expected direction of future implementation work. It is not part of the proposed material for evaluation in this publication; mappings, target artefacts and profiling details are expected to evolve in subsequent iterations of this guide.
Yellow row/cells: In this ballot publication, some row/cells of the mapping table have been left in yellow to indicate areas requiring further review or refinement; including feedback from the Xt-EHR joint action (see note above). These highlights will be addressed in subsequent updates to ensure accuracy and completeness of the mappings.

CancerPatient -> PERSON / OBSERVATION / CONDITION_OCCURRENCE

This page explains how elements from the CancerPatient logical model are expressed in OMOP, using the PERSON, OBSERVATION and CONDITION_OCCURRENCE table.

Mapping Context
  • Source logical model: CancerPatient
  • Target OMOP Tables: PERSON / OBSERVATION / CONDITION_OCCURRENCE

CancerPatient -> PERSON / OBSERVATION / CONDITION_OCCURRENCE
CancerPatient (Logical Model) Relationship PERSON / OBSERVATION / CONDITION_OCCURRENCE
Element Relation Table Field(s) Notes
birthDate equivalent PERSON year_of_birth, month_of_birth, day_of_birth Only year_of_birth is mandatory
sexAtBirth equivalent PERSON gender_concept_id See below for code mapping.
observedSexGender equivalent OBSERVATION observation_concept_id More information here. Codings can be found here.
comorbiditiesAtCancerDiagnosis equivalent CONDITION_OCCURRENCE condition_concept_id
comorbiditiesAtCancerDiagnosis equivalent OBSERVATION observation_concept_id

sexAtBirth Logical Model Coding -> OMOP Coding
sexAtBirth (Logical Model) Relationship gender_concept_id (OMOP)
Male equivalent 8507
Female equivalent 8532
Unknown equivalent 0
Other equivalent 0

Return to overview: Cancer Logical Models -> OMOP